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I don't know if anyone here has this problem, but in any discussion about energy, it's helpful to point this out, for the benefit of any people reading who are still fuzzy about this...
Whenever the media talks about energy, they blur the lines between energy sources, storage, and usage, thus making any real conversation really hard.
Fuel cells are like a new kind of engine, they take fuel in and convert it to effort, in this case, they take hydrogen, methanol, etc and turn it into electricity. When you see the media asking if fuel cells can solve the energy crisis, this makes about as much sense as asking if the internal combustion engine can solve it. These things are energy consumers, not energy sources.
Hydrogen. Far from what the popular press may lead you to believe, hydrogen is not the savior of the upcoming energy supply crisis. In fact hydrogen is not an energy source at all, it is just an energy storage medium, like a battery. One cannot go and "mine" molecular hydrogen any more than one can go and mine batteries. Hydrogen must be made through various processes, such as electrolysis (splitting water in to H2 + O) or stripping the hydrogen from other molecules, like methane. These processes all take more energy to use than can be extracted by using the hydrogen in a fuel cell or any other type of engine. So why do it then, if we're going to lose energy? Because it can put the energy into a form that's easy to carry around, same as why you use rechargeable batteries instead of really long extension cords.
Oil. This is what it all comes down to, energy supplies. Right now oil is one of our most important energy supplies. Why? Because for the moment it is cheap and plentiful, and it packs an incredible energy density (by carrying a little oil around, you get a lot of energy). The comparisons in the media between an oil economy and a hydrogen economy are a bit disingenuous, because you're comparing a energy source to energy storage. The real alternatives to oil and other fossil fuels like natural gas and coal are things like solar, wind power, hydro power, nuclear fission and (maybe someday) fusion, biomass, and geothermal, to name but a few. If we are going to retool our transportation to use fuel cells in order to stop suckling at the teat of oil, it is these sources that are going to make the hydrogen that will be used. And looking at the big energy picture, transportation only accounts for about 10% of the energy used in the US, the bulk of it is used in areas like industry and electrifying and heating peoples homes.
In order to stave off any crisis about the availability of petro fuels (not to mention the environmental costs of continuing to dump all that CO2 into the air), there must be a revolution in where we get our energy from, alternative energy sources must be developed, the blurring of the lines between these categories of sources, storage, and usage make having conversations about this issue very difficult.
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